PROFILE Software

[.ZIP] Download PROFILE


Publications on Modeling

[PDF]
Huettel, M., P. Berg, J.E. Kostka. (2014). Benthic Exchange and Biogeochemical Cycling in Permeable Sediments. Annu. Rev. Mar. Sci. 6: 8.1-8.29.


Hayn, M., R.W. Howarth, R. Marino, N. Ganju, P. Berg, K.H. Foreman, A.E. Giblin, K.J. McGlathery. (In Press). Exchange of nitrogen and phosphorus between a shallow seagrass-dominated lagoon and coastal waters. Estuaries and Coasts.

[PDF]
Howarth, R.W., M. Hayn, R.M. Marino, K.H. Foreman, P. Berg, A.E. Giblin, K.J. McGlathery, J.D. Walker. (Accepted). Metabolism of a nitrogen-enriched coastal marine lagoon during summertime. Biogeochemistry. DOI 10.1007/s10533-013-9901-x.

[PDF]
Long, M. H., J. E. Rheuban, P. Berg, and J. C. Zieman. (2012). A comparison and correction of light intensity loggers to photosynthetically active radiation sensors. Limnology and Oceanography: Methods. 10: 416-424.

[PDF]
Koopmans, D., P. Berg. (2011) An alternative to traditional seepage meters: Dye displacement. Water Resources Research 47, W01506, doi:10.1029/2010WR009113.

[PDF]
Glud, R. N., H. Stahl, P. Berg, F. Wenzhöfer, K. Oguri, H. Kitazato (2009). In situ microscale variation in distribution and consumption of O2: A case study from a deep ocean margin sediment (Sagami Bay, Japan). Limnology and Oceanography. 54: 1-12.

[PDF]
Liao, Q., H. A. Bootsma, J. Xiao, V. J. Klump, A. Hume, M. H. Long, P. Berg (2009). Development of an in situ Underwater Particle Image Velocimetry (UWPIV) System and Its Deployment in Lake Michigan. Limnology and Oceanography: Methods. 7: 169-184.

[PDF]
Long, M. H., K. J. McGlathery, J. C. Zieman, P. Berg (2008). The role of organic acid exudates in liberating phosphorus from seagrass-vegetated carbonate sediments. Limnology and Oceanography. 53: 2616-2626.

[PDF]
Berg, P., D. Swaney, S. Rysgaard, B. Thamdrup, H. Fossing. (2007) A fast numerical solution to the general mass-conservation equation for solutes and solids in aquatic sediments. Journal of Marine Research. 65:317-343.

[PDF]
Reynolds, L. K., J. C. Zieman, P. Berg. (2007) Lucinid Clam Influence on the Biogeochemistry of the seagrass Thalassia testudinum sediments. Estuaries. 30:482-490.

[PDF]
Glud, R. N., P. Berg, H. Fossing, B. B. Jørgensen. (2007) Effect of the diffusive boundary layer (DBL) on benthic mineralization and oxygen distribution: a theoretical model analysis. Limnology and Oceanography. 52:547-557.

[PDF]
Hoffmann, C. C., P. Berg, M. Dahl, S. E. Larsen, H. E. Andersen, B. Andersen. (2006) Groundwater flow and transport of nutrients through a riparian meadow - Field data and modeling. Journal of Hydrology. 331:315-335.

[PDF]
Ray, G. C, J. McCormick-Ray, P. Berg, H. E. Epstein. (2006) Pacific walrus: Benthic bioturbator of Beringia. Journal of Experimental Marine Biology and Ecology. 330:403–419.

[PDF]
Meile, C., P. Berg, P. Van Cappellen, K. Tuncay. (2005) Solute-specific pore water irrigation: Implications for chemical cycling in early diagenesis. Journal of Marine Research. 63: 601-621.

[PDF]
Elberling, B., B.H. Jakobsen, P. Berg, J. Søndergaard, C. Sigsgaard. (2004) Influence of vegetation, temperature, and water content on soil carbon distribution and mineralization in four high Arctic soils. Arctic, Antarctic, and Alpine Research. 36:528-538.

[PDF]
Berg, P., S. Rysgaard, and B. Thamdrup. 2003. Dynamic modeling of early diagenesis and nutrient cycling. A case study in an Arctic marine sediment. American Journal of Science. 303:905-955.

[PDF]
Habicht K.S., M. Gade, B. Thamdrup, P. Berg, D.E. Canfield. 2002. Calibration of sulfate levels in the Archean Ocean. Science. 298:2372-2374.

[PDF]
McGlathery, K.J., P. Berg, and R. Marino. 2001. Using porewater profiles to assess nutrient availability in marine carbonate sediments. Biogeochemistry. 56:239-263.

[PDF]
Berg, P., S. Rysgaard, P. Funch, and M. K. Sejr. 2001. Effects of bioturbation on solutes and solids in marine sediments. Aquat. Microb. Ecol. 26:81-94.

[PDF]
Berg, P. and K. J. McGlathery. 2001. A high-resolution porewater sampling for sandy sediments. Limnology and Oceanography. 46:203-210.

[PDF]
Hoffmann, C.C., S. Rysgaard, and P. Berg. 2000. Denitrification Rates Predicted by Nitrogen-15 Labeled Nitrate Microcosm Studies, In Situ Measurements, and Modeling. Journal of Environmental Quality. 29:2020-2028.

[PDF]
Fossing, H., T. G. Ferdelman, and P. Berg. 2000. Sulfate reduction and methane oxidation in continental margin sediments influenced by irrigation (South-East Atlantic off Namibia). Geochim. Cosmochim. Acta 64:897-910.

[PDF]
Rysgaard S, P.B. Christensen, M.V. Sørensen, P. Funch, and P. Berg. 2000 Marine meiofauna, carbon and nitrogen mineralization in sandy and soft sediments of Disko Bay, West Greenland. Aquat. Microb. Ecol. 21:59-71.

[PDF]
Berg, P. 1999. Long-term simulation of water movement in soils using mass-conserving procedures. Advances in Water Resources. 22:419-430.

[PDF]
Rysgaard S, Thamdrup B, Risgaard-Petersen N, Fossing H, Berg P, Christensen PB, Dalsgaard T. 1998. Seasonal carbon and nitrogen mineralization in a high-Arctic coastal marine sediment, Young Sound, Northeast Greenland. Marine Ecology Progress Series. 175:261-276.

[PDF]
Berg, P., N. Risgaard-Petersen, and S. Rysgaard. 1998. Interpretation of measured concentration profiles in the sediment porewater. Limnology and Oceonography 43:1500-1510.

[PDF]
Rysgaard, S. and P. Berg. 1996. Nitrogen mineralization in a northeastern Greenland sediment: mathematical modeling, measured sediment porewater profiles and actual activities. Aquatic Microbiology 11:297-305.