Research Citations

Lecture Topic: Speciation (Chapter 23)

Avise, J. C. and W. S. Nelson (1989). "Molecular genetic relationships of the extinct dusky seaside sparrow." Science 243: 646-648. pdf

Avise, J. C., J. C. Patton, et al. (1980). "Evolution genetics of birds: comparative molecular evolution in New World warblers and rodents." Journal of Heredity 71: 303-310.

Camin, J. H. and P. R. Ehrlich (1958). "Natural selection in water snakes (Natrix sipedon L.) on islands in Lake Erie." Evolution 12: 504-511.

Cann, R. L., M. Stoneking, et al. (1987). "Mitochondrial DNA and human evolution." Nature 325: 31-36.

Carroll, S. P. and C. Boyd (1992). "Host race radiation in the soapberry bug: natural history with the history." 46: 1052-1069. pdf

Censky, E. J., K. Hodge, et al. (1998). "Over-water dispersal of lizards due to hurricanes." Nature 395: 556.

Coyne, J. A. and H. A. Orr (1998). "The evolutionary genetics of speciation." Proceedings of the Royal Society of London, B 353: 287-305.

Grant, P. R. and B. R. Grant (1995). "The founding of a new population of Darwin's finches." Evolution 49: 229-240.

Haffer, J. (1969). "Speciation in Amazonian forest birds." Science 165: 131-137.

Pearson, S. F. and D. A. Manuwal (2000). "Influence of niche overlap and territoriality on hybridization between Hermit warblers and Townsend's warblers." The Auk 117: 175-183.

Prance, G. T. (1996). "Islands in Amazonia." Philosophical Transactions of the Royal Society of London B 351: 823-833.

Rabe, E. W. and C. H. Haufler (1992). "Incipient polyploid speciation in the maidenhair fern (Adiantum pedatum: adiantaceae)." American Journal of Botany 79: 701-707.

Rieseberg, L. H., B. Sinervo, et al. (1996). "Role of gene interactions in hybrid speciation: Evidence from ancient and experimental hybrids." Science 272: 741-745.

Rohwer, S., E. Bermingham, et al. (2001). "Plumage and mitochondrial DNA haplotype variation across a moving hybrid zone." Evolution 55: 405-422.

Rohwer, S. and C. Wood (1998). "Three hybrid zones between Hermit and Townsend's Warblers in Washington and Oregon." The Auk 115: 284-310

Tishkoff, S. A., E. Dietzsch, et al. (1996). "Global patterns of linkage disequilibrium at the CD4 locus and modern human origins." Science 271: 1380-1387

Lecture Topic: The History of Life (Ch 24)

Benton, M. J. (1995). "Diversification and extinction in the history of life." Science 268: 52-58. pdf

Horai, S., K. Hayasaka, et al. (1995). "Recent African origin of modern humans revealed by complete sequences of hominoid mitochondrial DNAs." Proceedings of the National Academy of Sciences 92: 532-536.

Li, C.-W., J.-Y. Chen, et al. (1998). "Precambrian sponges with cellular structures." Science 279: 879-882. pdf

Losos, J. B., K. I. Warheit, et al. (1997). "Adaptive differentiation following experimental island colonization in Anolis lizards." Nature 387: 70-73.

Losos, J.B., T. R. Jackman, A. Larson, K. de Queiroz, L Rodriguez-Schettino (1998). "Contingency and determinisim in replicated adaptive radiations of island lizards." Science 279: 2115-2118. pdf Summary/Perspective on the Losos et al 1998 paper: For Island Lizards, History Repeats Itself. Gretchen Vogel. Science 1998 March 27; 279: 2043 (in Research News)

Sordino, P., F. v. d. Hoeven, et al. (1995). "Hox gene expression in teleost fins and the origin of vertebrate digits." Nature 375: 678-681.

Wilson, A. C., et al. (1985). "Mitochondrial DNA and two perspectives on evolutionary genetics." Biological Journal of the Linnean Society 26: 375-400.

Lecture Topic: Bacteria and Archaea (Chapter 25)

Bult, Carol J.; Owen White; Gary J. Olsen; Lixin Zhou; Robert D. Fleischmann; Granger G. Sutton; Judith A. Blake; Lisa M. FitzGerald; Rebecca A. Clayton; Jeannine D. Gocayne; Anthony R. Kerlavage; Brian A. Dougherty; Jean-Francois Tomb; Mark D. Adams; Claudia I. Reich; Ross Overbeek; Ewen F. Kirkness; Keith G. Weinstock; Joseph M. Merrick; Anna Glodek; John L. Scott; Neil S. M. Geoghagen; Janice F. Weidman; Joyce L. Fuhrmann; Dave Nguyen; Teresa R. Utterback; Jenny M. Kelley; Jeremy D. Peterson; Paul W. Sadow; Michael C. Hanna; Matthew D. Cotton; Kevin M. Roberts; Margaret A. Hurst; Brian P. Kaine; Mark Borodovsky; Hans-Peter Klenk; Claire M. Fraser; Hamilton O. Smith; Carl R. Woese; J. Craig Venter. Complete Genome Sequence of the Methanogenic Archaeon, Methanococcus jannaschii Science, New Series, Vol. 273, No. 5278. (Aug. 23, 1996), pp. 1058-1073. pdf

Summary Perspective of the Bult et al 1998 paper and of Carl Woese' contribtuion; Genome Data Shake Tree of Life (in Research News) Elizabeth Pennisi Science, New Series, Vol. 280, No. 5364. (May 1, 1998), pp. 672-674. pdf

Doolittle, W. F. and J. R. Brown (1994). "Tempo, mode, the progenote, and the universal root." Proceedings of the National Academy of Sciences USA 91: 6721-6728.

Ewald, P. W. (1993). "The evolution of virulence." Scientific American April: 86-93.

Hilario, E. and J. P. Gogarten (1993). "Horizontal transfer of ATPase genes—the tree of life becomes a net of life." BioSystems 31: 111-119.

Liu, S. V., J. Zhou, et al. (1997). "Thermophilic Fe(III)-reducing bacteria from the deep subsurface: the evolutionary implications." Science 277: 1106-1109.

Morrel, V. (1997). "Microbiology's scarred revolutionary". Science 276:699-702. pdf

Pace, N. R. (1997). "A molecular view of microbial diversity and the biosphere." Science 276: 734-740.

Schulz, H. N., T. Brinkhoff, et al. (1999). "Dense populations of a giant sulfur bacterium in Namibian shelf sediments." Science 284: 493-495.

Smith, M. W. and R. F. Doolittle (1992). "Anomalous phylogeny involving the enzyme glucose-6-phosphate isomerase." Journal of Molecular Evolution 34: 544-545.

Scientific American: E.T. Life-Forms Might Resemble Newly Discovered Microbial Community link


Lecture Topic: Viruses (Chapter 26)

Barré-Sinoussi, F., et al. (1983). "Isolation of a T-lymphotropic retrovirus from a patient at risk for acquired immune deficiency syndrome (AIDS)." Science 220: 868-871.

Feng, Y., C. C. Broder, et al. (1996). "HIV-1 entry cofactor: Functional cDNA cloning of a seven-transmembrane, G protein-coupled reactor." Science 272: 872-877.

Fraenkal-Conrat, H. (1964). "The genetic code of a virus." Scientific American 211: 47-54.

Gao, F., L. Yue, et al. (1992). "Human infection by genetically diverse SIVsm-related HIV-2 in west Africa." Nature 358: 495-499.

Gao, F. et. al. (1999) Origin of HIV in the chimpanzee Pan trogolodytes trogolodytes Nature 397:436-441 pdf

Summary/perspective of the Gao et al (1999) paper: Weiss, R. A. and R. W. Wrangham (1999). "From Pan to pandemic." Nature 397: 385-386. pdf

Gottlieb, M. S., R. Schroff, et al. (1981). "Pneumocystis carinii pneumonia and mucosal candidiasis in previously healthy homosexual men." The New England Journal of Medicine 305: 1425-1431.

Ho, D. D. (1996). "Viral counts in HIV infection." Science 272: 1124-1125. pdf

Maddon, P. J., A. G. Dalgleish, et al. (1986). "The T4 gene encodes the AIDS virus receptor and is expressed in the immune system and the brain." Cell 47: 333-348.

Weiss, R. A. and R. W. Wrangham (1999). "From Pan to pandemic." Nature 397: 385-386. pdf

Wiess, R. A. (1999). "Polio vaccine exhonorated." Nature 410: 1035-1036. pdf

Lecture Topic: Protists (Chapter 27)

Baldauf, S. L. (2003). "The deep roots of Eukaryotes." Science 300:1703-1706. pdf

Covello, P. S. and M. W. Gray (1992). "Silent mitochondrial and active nuclear genes for subunit 2 of cytochrome c oxidase (cox2) in soybean: evidence for RNA-mediated gene transfer." EMBO Journal 11: 3815-3820.

Giovannoni, S. J., S. Turner, et al. (1988). "Evolutionary relationships among cyanobacteria and green chloroplasts." Journal of Bacteriology 170: 3584-3592.

Gray, M. W. G. Burger, B. Franz Lang (1999). "Mitochondrial evolution.". Science 283:1476-1481. pdf

Köhler, S., C. F. Delwiche, et al. (1997). "A plastid of probable green algal origin in Apicomplexan parasites." Science 275:1485-1489. pdf

Margulis, L. (1991). "Origins of species: acquired genomes and individuality." BioSystems 31: 121-125.

Nugent, J. M. and J. D. Palmer (1991). "RNA-mediated transfer of the gene coxII from the mitochondrion to the nucleus during flowering plant evolution." Cell 66: 473-481.

Roberts, F., et al. (1998). "Evidence for the shikimate pathway in apicomplexan parasites." Nature 393: 801-805.

Schopf, J. W. (1992). The oldest fossils and what they mean. Major Events in the History of Life. J. W. Schopf. Boston, Jones and Bartlett: 29-63

Lecture Topic: Land Plants (Chapter 28)

Gray, J. (1993). "Major Paleozoic land plant evolutionary bio-events." Palaeogeography, Palaeoclimatology, and Palaeoecology 104: 153-169.

Johnson, S. D. and K. E. Steiner (1997). "Long-tongued fly pollination and evolution of floral spur length in the Disa draconis complex (Orchidaceae)." Evolution 51: 45-53.

Kenrick, P. and P. R. Crane (1991). "Water-conducting cells in early fossil land plants: implications for the early evolution of tracheophytes." Botanical Gazette 152: 335-356.

Paul Kenrick, Peter R. Crane. (1997)." The origin and early evolution of plants on land." Nature389, 33 - 39 (Review Article) pdf

Li, H., E. L. Taylor, et al. (1996). "Permian vessel elements." Science 271: 188-189.

Tanksley, S. D. and S. R. McCouch (1997). "Seed banks and molecular maps: unlocking genetic potential from the wild." Science 277: 1063-1066. pdf

Taylor, W. A. (1995). "Spores in earliest land plant." Nature 373: 391-392.

Lecture Topic: Animals (Chapter 30)

Andres, A. J., J. C. Fletcher, et al. (1993). "Molecular analysis of the initiation of insect metamorphosis: a comparative study of Drosophila ecdysteroid-regulated transcription." Developmental Biology 160: 388-404.

Block, B. A., J. R. Finnerty, et al. (1993). "Evolution of endothermy in fish: Mapping physiological traits on a molecular phylogeny." Science 260: 210-214.

Cavalli-Sforza, L. L. (1998). "The DNA revolution in population genetics." TIG 14: 60-65.

Goodall, J. (1986). The Chimpanzees of Gombe. Cambridge, The Belknap Press of Harvard University Press.

Pääbo, S. (1995). "The Y chromosome and the origin of all of us (men)." Science 268: 1141-1142.

Panganiban, G., S. M. Irvine, et al. (1997). "The origin and evolution of animal appendages." Proceedings of the National Academy of Sciences 94: 5162-5166.

Swalla, B. J. and W. R. Jeffery (1996). "Requirement of the Manx gene for expression of chordate features in a tailless ascidian larva." Science 274: 1205-1207.

Williams, T. A. and L. M. Nagy (1996). "Comparative limb development in insects and crustaceans." Seminars in Developmental Biology 7: 615-628.

Lecture Topic: Plant Form and Function (Chapter 31)

Baldwin, B. G. and M. J. Sanderson (1998). "Age and rate of diversification of the Hawaiian silversword alliance (Compositae)." Proceedings of the National Academy of Sciences, USA 95: 9402-9406.

Clausen, J., D. D. Keck, et al. (1945). Experimental studies on the nature of species: Plant evolution through amphiploidy and autoploidy, with examples from madiinae. Washington D.C., Carnegie Institution of Washington Publications.

Lloyd, A. H. and L. J. Graumlich (1997). "Holocene dynamics of treeline forests in the Sierra Nevada." Ecology 78: 1199-1210.

Reich, P. B., M. B. Walters, et al. (1997). "From tropics to tundra: Global convergence in plant functioning." Proceedings of the National Academy of Sciences, USA 94: 13730-13734.

Lecture Topic: Plant Nutrition (Chapter 33)

Arnon, D. I. and P. R. Stout (1939). "The essentiality of certain elements in minute quantity for plants with special reference to copper." Plant Physiology 14: 371-375.

Epstein, E., D. W. Rains, et al. (1963). "Resolution of dual mechanisms of potassium absorption by barley roots." Proceedings of the National Academy of Sciences, USA 49: 684-692.

Etzler, M. E., G. Kalsi, et al. (1999). "A nod factor binding lectin with apyrase activity from legume roots." Proceedings of the National Academy of Sciences, USA 96: 5856-5861.

Fang, Y. and A. M. Hirsch (1998). "Studying early nodulin gene ENOD40 expression and induction by nodulation factor and cytokinin in transgenic alfalfa." Plant Physiology 116: 53-68.

Latshaw, W. L. and E. C. Miller (1924). "Elemental composition of the corn plant." Journal of Agricultural Research 27: 845-853.

Matthies, D. (1995). "Parasitic and competitive interactions between the hemiparasites Rhinanthus serotinus and Odontites rubra and their host Medicago sativa." Journal of Ecology 83: 245-251.

Murphy, A. and L. Taiz (1995). "Comparison of metallothionein gene expression and nonprotein thiols in ten Arabidopsis ecotypes." Plant Physiology 109: 945-954.

Schachtman, D. P. and J. I. Schroeder (1994). "Structure and transport mechanism of a high-affinity potassium uptake transporter from higher plants." Nature 370: 655-658.

Schubert, S. and A. Läuchli (1990). "Sodium exclusion mechanisms at the root surface of two maize cultivars." Plant and Soil 123: 205-209.

Lecture Topic: Animal Form and Function (Chapter 38)

Garland, T., Jr. (1983). "The relation between maximal running speed and body mass in terrestrial mammals." Journal of Zoology 199: 157-170.

Grant, B. R. and P. R. Grant (1993). "Evolution of Darwin's finches caused by a rare climatic event." Proceedings of the Royal Society of London B 251: 111-117.

Grant, P. R. (1981). "The feeding of Darwin's finches on Tribulus cistoides (L.) seeds." Animal Behaviour 29: 785-793.

Heyning, J. E. and J. G. Mead (1997). "Thermoregulation in the mouths of feeding gray whales." Science 278: 1138-1139.

Ressel, S. and J. J. Schall (1989). "Parasites and showy males: malarial infection and color variation in fence lizards." Oecologia 78: 158-164.

Sinervo, B. and P. Licht (1991). "Proximate constraints on the evolution of egg size, number, and total clutch mass in lizards." Science 252: 1300-1302.

Wells, P. R. and A. W. Pinder (1996). "The respiratory development of Atlantic salmon." The Journal of Experimental Biology 199: 2737-2744.