List of .kin files by Chapter in Biochemistry

The .kin files in Biochemages illustrate and elaborate upon various topics covered in Biochemistry by Garrett and Grisham. The list below indicates the .kin files that are relevant to particular chapters in Biochemistry.

Chapter 3

• PROSTR01.KIN - structures of the 20 common amino acids

Chapter 5

• Kin 3 in DEMO2_2B.KIN - bovine pancreatic trypsin inhibitor
• Kin 5 in DEMO2_2B.KIN - helix-helix contacts
• GURSKY.KIN - conformational changes in insulin over the pH range 7-11.
• PROSTR02.KIN - secondary structure: the alpha helix
• PROSTR03.KIN - secondary structure: the beta sheet
• PROSTR04.KIN - tertiary structure: the four-helix bundle (hemerythrin)
• PROSTR05.KIN - tertiary structure: the helix-turn-helix motif
• PROSTR06.KIN - tertiary structure: bacteriochlorophyll, a protein with a large beta sheet
• PROSTR07.KIN - tertiary structure: a membrane-spanning beta sheet (porin)
• PROSTR08.KIN - tertiary structure: a zinc finger motif
• PROSTR09.KIN - mixed tertiary structure motif: a parallel beta barrel
• PROSTR10.KIN - mixed tertiary structure motif: an alpha/beta fold (ras)
• PORSTR11.KIN - quaternary structure: the coiled coil motif (a leucine zipper)
• PROSTR12.KIN - quaternary structure: association of two identical peptide chains (HIV protease)
• PROSTR13.KIN - quaternary structure: association of two nonidentical peptide chains (hemoglobin)
• PROSTR14.KIN - quaternary structure: association of three nonidentical subunits (photosynthetic reaction center)
• PROSTR15.KIN - quaternary structure: the immunoglobulin fold in an antibody molecule
• PROSTR16.KIN - the disulfide bridge
• protour1.kin - doubly-wound parallel alpha/beta proteins
• protour2.kin - Coiled Coils: The Leucine Zipper Peptide from Transcription Factor GCN4
• protour4.kin - Tertiary Structure: A Survey of Small Irregular Proteins
• protour7.kin - Examples of The Common Tertiary Structure Motifs

Chapter 12

• PROSTR13.KIN - Hemoglobin

Chapter 13

• Kin 4 and Kin 5 in DEMO3_0.KIN - serine proteases: specificity and catalysis
• PROSTR12.KIN - HIV Protease
• protour5.kin - zinc proteases
• protour6.kin - serine proteases

Chapter 22

• PROSTR06.KIN - bacteriochlorophyll
• PROSTR14.KIN - photosynthetic reaction center

Chapter 28

• PROSTR15.KIN - the immunoglobulin fold in an antibody molecule

Chapter 30

• PROSTR05.KIN - DNA-binding proteins: the helix-turn-helix motif
• PROSTR08.KIN - DNA-binding proteins: the zinc finger motif
• PROSTR11.KIN - DNA-binding proteins: the leucine zipper motif
• protour2.kin - DNA-binding proteins: the leucine zipper of GCN4
• PROSTR17.KIN - protein-DNA interactions: lambda repressor
• protour3.kin - protein-DNA interactions: the lambda repressor/operator complex
• PROSTR18.KIN - protein-DNA interactions: zinc fingers