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McComas, W.F. 1994. Investigating Evolutionary Biology in the Laboratory. National Association of Biology Teachers.

This laboratory manual contains some interesting ideas for laboratory exercises. The audience is primarily advanced secondary students, however, and many of the exercises would need to be modified a bit to be appropriate for undergraduate students.

Labs appropriate for undergraduate students:

The birds and the beaks (simulated foraging adaption)

Demonstrating color adaptation in food selection

Simulating natural selection (variation of colored beans in the grass exercise with students as predators)

Demonstrating natural selection through survival value of cryptic coloration and apostatic selection

Demonstrating the effects of selection (bean bag genetics)

A model of microevolution in action (an additional student as predator exercise

Phylogentic exercises with pseudo-organisms