1.Long, T. and R. M. Ford, “Enhanced Transverse
Migration of Bacteria by Chemotaxis in a Porous T-Sensor”, Environmental
Science & Technology, 2009 in press

2.Wang, M., R. M. Ford and R. W. Harvey, Coupled
Effect of Chemotaxis and Growth on Microbial Distributions in Organic-Amended
Aquifer Sediments: Observations from Laboratory and Field Studies, Environmental
Science & Technology, 2008, 42 (10), pp
3556–3562

3.Lanning, L., R. M. Ford and T. Long,
“Bacterial Chemotaxis Transverse to Axial Flow in a Microfluidic
Channel,” Biotechnology & Bioengineering, 2008, 100 (4) 653-663

4.Kusy, K. and R. M. Ford, “Monte
Carlo Simulations Derived from Direct Observations of Individual
Bacteria Inform Macroscopic Migration Models at Granular Porous Media
Interfaces,” Environmental Science & Technology, 41 (2007)
6403-6409

5.Wood, B.D. and R.M. Ford, “Biological processes
in porous media: From the pore scale to the field,” Advances in Water
Resources, 30 (2007) 1387-1391.

6.Ford, R.M. and R.W. Harvey, “Role of chemotaxis
in the transport of bacteria through porous media,” Advances in Water
Resources, 30 (2007) 1608-1617.

7.Olson, M., R. Ford, J. Smith and E. Fernandez,
"Mathmatical modeling of chemotactic bacterial
transport through a two-dimensional heterogeneous porous medium,"
Bioremediation Journal, 10 (2006) 13-23. DOI:
10.1080/10889860600842886

8.Olson, M.S., R.M. Ford, J.A. Smith, and E.J.
Fernandez, Analysis of column tortuosity for MnCl2 and bacterial diffusion
using magnetic resonance imaging. Environmental Science & Technology,
2005. 39(1): p. 149-154.

9.Kohlmeier, S., T.H.M.
Smits, R.M. Ford, C. Keel, H. Harms, and L.Y. Wick, Taking the fungal
highway: Mobilization of pollutant-degrading bacteria by fungi.
Environmental Science & Technology, 2005. 39(12): p.
4640-4646.

10.Olson, M.S., R.M. Ford, J.A. Smith, and E.J.
Fernandez, Quantification of bacterial chemotaxis in porous media using
magnetic resonance imaging (MRI). Abstracts of Papers of the American
Chemical Society, 2004. 228: p. U612-U612.

11.Olson, M.S., R.M. Ford, J.A. Smith, and E.J.
Fernandez, Ouantification of bacterial
chemotaxis in porous media using magnetic resonance imaging. Environmental
Science & Technology, 2004. 38(14): p. 3864-3870.

12.Sherwood, J.L., J.C. Sung, R.M. Ford, E.J.
Fernandez, J.E. Maneval, and J.A. Smith, Analysis
of bacterial random motility in a porous medium using magnetic resonance
imaging and immunomagnetic labeling.
Environmental Science & Technology, 2003. 37(4): p.
781-785.

13.Jin, M.H., R.M. Ford, and P.T. Cummings, A
numerical method for solving a scalar advection-dominated transport equation
with concentration-dependent sources. Computers & Chemical
Engineering, 2003. 27(10): p. 1405-1419.

14.Chen, K.C., R.M. Ford, and P.T. Cummings, Cell
balance equation for chemotactic bacteria with a biphasic tumbling frequency.
Journal of Mathematical Biology, 2003. 47(6): p. 518-546

Mills, A. L., J. S. Herman,
R. M. Ford, and G. M. Hornberger, “Functional
redundancy promotes functional stability in diverse microbial bioreactor
communities.” SAE Technical Paper Series No.2003-01-2509.

Sherwood, J. L., J. C. Sung,
R. M. Ford, E. J. Fernandez, J.E. Maneval and J.
A. Smith, "Analysis of Bacterial Random Motility in a Porous Medium
Using Magnetic Resonance Imaging and Immunomagnetic
Labeling," Environmental Science & Technology, 37
(2003) 781-785.

Smith, L.V., L. K. Tamm and
R. M. Ford, "Explaining non-zero separation distances between
attached bacteria and surfaces measured by total internal relection aqueous fluorescence microscopy," Langmuir,
18 (2002) 5247-5255.

Vigeant,
M. A. S., R. M. Ford, M. Wagner and L. K. Tamm "Reversible and
irreversible adhesion of motile E. coli bacteria analyzed by TIRAF
microscopy," Appl. Environ. Microbiol.,68
(2002) 2794-2801.

Lanning, Larry, M. and R. M.
Ford, "Glass Micromodel Study of Bacterial Dispersion in Spatially
Periodic Porous Networks," Biotechnology & Bioengineering,
78 (2002) 556-566.

McClaine,
J. W. and R. M. Ford, "Reversal of flagellar
rotation is important in initial attachment of Escherichia coli to glass in
a dynamic system in high- and low-ionic-strength buffers," Appl.Environ. Microbiol.,68 (2002) 1280-1289.

McClaine,
J. W. and R. M. Ford, "Characterizing the Adhesion of Motile and Nonmotile Escherichia coli to a Glass Surface Using a
Parallel Plate Flow Chamber," Biotechnology & Bioengineering,
78 (2002) 179-189.

Lewus,
P. and R. M. Ford, “Quantification of Random Motility and Chemotaxis
Bacterial Transport Coefficients using Individual-Cell and
Population-Scale Assays,” Biotechnol. Bioeng, 75 (2001) 292-304.

Margot A.-S. Vigeant, Michael Wagner, Lukas K. Tamm, and Roseanne
M. Ford, "Nanometer Distances between Swimming Bacteria and Surfaces
Measured by Total Internal Reflection Aqueous Fluorescence
Microscopy" Langmuir, 17 (2001), 2235-2242.

Greenbaum,
E., S.L. Blankinship, J.W. Lee, and R.M. Ford, Solar
photobiochemistry: Simultaneous photoproduction of hydrogen and oxygen in a confined
bioreactor. Journal of Physical Chemistry B, 2001. 105(17):
p. 3605-3609.

Armitage,
J., T. Pitta, M. Vigeant,
H. Packer and R. Ford, "Transformations in Flagellar
Structure in Rhodobactersphaeroides
and their Possible Relationship to Changes in Swimming Speed." J. Bacteriol., 181 (1999) 4825-4833.

Lewus,
P. and R. M. Ford, "Temperature-Sensitive Motility of Sulfolobusacidocaldarious
Influences Population Distribution in Extreme Environments," J. Bacteriol., 181 (1999) 4020-4025.

Chen, K. C., R. M. Ford and
P. T. Cummings, "Spatial Effect of Tumbling Frequencies for Motile
Bacteria on Cell Balance Equations," Chem. Eng. Sci.,
54 (1999) 593-617.

Chen, K. C., R. M. Ford and
P. T. Cummings, "Perturbation Expansion of Alt’s Cell Balance
Equations Reduces to Segel’s 1D Equations for
Shallow Chemoattractant Gradients," SIAM
J. Appl. Math., 59 (1999) 35-57.

Chen, K. C., R. M. Ford and
P. T. Cummings, "Mathematical Models for Motile Bacterial Transport
in Cylindrical Tubes," J. theor. Biol.,
195 (1998) 481-504.

Chen, K. C., R. M. Ford and
P. T. Cummings, "The Global Turning Probability Density Function for
Motile Bacteria and Its Applications, "J.
Theor. Biol., 195 (1998) 139-155.

Duffy, K. J., R. M. Ford and
P. T. Cummings, "Residence Time Calculation for Chemotactic Bacteria
within Porous Media," Biophys. J.,
73 (1997) 2930-2936.

Vigeant,
M. A. S. and R. M. Ford, "Interactions Between Motile E. coli
and Glass with Varying Ionic Strength, as Observed with a
Three-dimensional Tracking Microscope," Appl. Environ. Microbiol.,63 (1997) 3474-3479.

Duffy, K. J. and R. M. Ford,
"Turn Angle and Run Time Distributions Characterize Swimming Behavior
for Pseudomonas putida," J. Bacteriol., 179 (1997) 1428-1430.

Frymier,
P. D. and R. M. Ford "Analysis of Bacterial Swimming Speed
Approaching a Solid-Liquid Interface," AIChE
Journal, 43 (1997) 1341-1347.

Barton, J. W. and R. M. Ford,
"Mathematical Model for Characterization of Bacterial Migration Through Sand Cores," Biotechnology &
Bioengineering, 53 (1997) 487-496.

Brosilow,
B. J., R. M. Ford, S. S. Sarman, and P. T.
Cummings, "Numerical Solution of Transport Equations for Bacterial
Chemotaxis," SIAM
J. Appl. Math., 56 (1996) 1639-1663.

Reddy, H. L. and R. M. Ford,
"Analysis of Biodegradation and Bacterial Transport: Comparison of
Models with Kinetic and Equilibrium Bacterial Adsorption," J. Contam. Hydrol, 22
(1996) 271-287.

Barton, J. W. and R. M. Ford,
"Determination of Effective Random Motility Coefficient for Bacterial
Migration through Sand Cores" Appl. Environ. Microbiol.,61 (1995) 3329-3335.

Frymier,
P. D., R. M. Ford, H. C. Berg and P. T. Cummings, "Three-dimensional
tracking of motile bacteria near a solid planar surface," Proc.
Natl. Acad. Sci USA, 92 (1995)
6195-6199.

Duffy, K. J., P. T. Cummings
and R. M. Ford, "Random Walk Calculations for Bacterial Migration in
Porous Media," Biophys. J., 68
(1995) 800-806.

Strauss, I.,
P. D. Frymier, C. M. Hahn and R. M. Ford
"Analysis of Bacterial Migration: II. Studies of Multiple Attractant
Gradients," AIChE Journal41
(1995) 402-414.

Frymier,
P. D., R. M. Ford and P. T. Cummings, "Analysis of Bacterial
Migration: I. Numerical Solution of
Balance Equation," AIChE Journal40 (1994) 704-715.

Mercer, J. R., R. M. Ford, J.
L. Stitz and C. Bradbeer,
"Growth Rate Effects on Fundamental Transport Properties of Bacterial
Populations," Biotechnol. Bioeng. 42 (1993) 1277-1286.

Frymier,
P. D., R. M. Ford and P. T. Cummings, "Cellular Dynamics Simulations
of Bacterial Chemotaxis," Chem. Eng. Sci.48 (1993)
687-699.

Ford, R. M. and P. T.
Cummings, "On the Relationship Between Cell
Balance Equations for Chemotactic Cell Populations," SIAM
J. Appl. Math.52 (1992) 1426-1441.

Ford, R. M. and D. A. Lauffenburger, "A Simple Expression for
Quantifying Bacterial Chemotaxis Using Capillary Assay Data: Application
to the Analysis of Enhanced Chemotactic Responses from Growth-Limited
Cultures," Math. Biosci.109
(1992) 127-149.

Ford, R. M., B. R. Phillips,
J. A. Quinn, and D. A. Lauffenburger,
"Stopped-Flow Chamber and Image Analysis System for Quantitative
Characterization of Bacterial Population Migration: Motility and
Chemotaxis of E. coli K12 to Fucose,"
Microbial Ecology22 (1991) 127-138.

Ford, R. M. and D. A. Lauffenburger, "Analysis of Chemotactic Bacterial
Distributions in Population Migration Assays Using a Mathematical Model
Applicable to Steep or Shallow Attractant Gradients," Bull. Math.
Biol.53 (1991) 721-749.

Ford, R. M. and D. A. Lauffenburger, "Measurement of Bacterial Random
Motility and Chemotaxis Coefficients: II. Application of Individual
Cell-Based Mathematical Model," Biotechnol.
Bioeng.37 (1991) 661-672.

Ford, R. M., B. R. Phillips,
J. A. Quinn, and D. A. Lauffenburger, "Measurement
of Bacterial Random Motility and Chemotaxis Coefficients: I. Stopped-Flow Diffusion Chamber Assay," Biotechnol. Bioeng.37 (1991) 647-660.

Lauffenburger,
D. A., M. Rivero, F. Kelly, R. Ford, and J. DiRienzo, "Bacterial Chemotaxis - Cell Flux Model,
Parameter Measurement, Population Dynamics, and Genetic
Manipulation," Ann.N.Y. Acad. Sci.506
(1987) 281-295.

Givler,
R. M., P. Dhurjati, and M. T. Klein, "A
Model Compound Study of a Strategy for the Selective Microbial
Pretreatment of Lignin," Chem. Eng. J.30 (1985)
B37-B41.