Chongzhi Zang Lab  

Software


SICER (Spatial-clustering Identification of ChIP-Enriched Regions), a ChIP-Seq data analysis method. [Package] [Publication]

MANCIE (Matrix Analysis and Normalization by Concordant Information Enhancement), a computational method for high-dimensional genomic data integration. [Package] [Publication]

MARGE (Model-based Analysis of Regulation of Gene Expression), a comprehensive computational method for inference of cis-regulation of gene expression leveraging public H3K27ac genomic profiles in human or mouse. [Package] [Publication]

BART (Binding Analysis for Regulation of Transcription), a bioinformatics tool for predicting functional transcription factors (TFs) that bind at genomic cis-regulatory regions to regulate gene expression in the human or mouse genomes, given a query gene set or a ChIP-seq dataset as input. [Package] [Publication]


Last modified: April 12, 2018